HL_5FCI_007

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

5FCI|1|1|G|218, 5FCI|1|1|A|219, 5FCI|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.089

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

5FCI|1|1|G|216
5FCI|1|1|U|217
5FCI|1|1|G|218
5FCI|1|1|A|219
5FCI|1|1|G|220
5FCI|1|1|A|221
5FCI|1|1|A|222
5FCI|1|1|U|223
5FCI|1|1|C|224

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4-A

Chain N6

60S ribosomal protein L26-A