HL_5FCI_021

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5FCI|1|1|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_021 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0727

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5FCI|1|1|G|910
5FCI|1|1|C|911
5FCI|1|1|G|912
5FCI|1|1|A|913
5FCI|1|1|A|914
5FCI|1|1|A|915
5FCI|1|1|G|916
5FCI|1|1|A|917
5FCI|1|1|C|918

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain M5

60S ribosomal protein L15-A

Chain O7

60S ribosomal protein L37-A