HL_5FCI_052

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGACAUAGUUU

Length

11 nucleotides

Bulged bases

5FCI|1|1|U|2501

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_052 not in the Motif Atlas

Geometric match to HL_5TBW_052

Geometric discrepancy: 0.1124

The information below is about HL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59851.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5FCI|1|1|A|2441
5FCI|1|1|G|2442
5FCI|1|1|A|2443
5FCI|1|1|C|2444
5FCI|1|1|A|2445
5FCI|1|1|U|2501
5FCI|1|1|A|2502
5FCI|1|1|G|2503
5FCI|1|1|U|2504
5FCI|1|1|U|2505
5FCI|1|1|U|2506

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain O6

60S ribosomal protein L36-A