HL_5FCI_119

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

5FCI|1|5|U|133, 5FCI|1|5|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_119 not in the Motif Atlas

Homologous match to HL_8P9A_116

Geometric discrepancy: 0.1338

The information below is about HL_8P9A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

5FCI|1|5|C|132
5FCI|1|5|U|133
5FCI|1|5|U|134
5FCI|1|5|C|135
5FCI|1|5|G|136

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m5

60S ribosomal protein L15-A

Chain o5

60S ribosomal protein L35-A