HL_5FCI_134

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_134 not in the Motif Atlas

Homologous match to HL_8P9A_131

Geometric discrepancy: 0.119

The information below is about HL_8P9A_131

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5FCI|1|5|G|844
5FCI|1|5|G|845
5FCI|1|5|A|846
5FCI|1|5|A|847
5FCI|1|5|A|848
5FCI|1|5|C|849

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain c1

40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain c3

40S ribosomal protein S13