3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

8P9A|1|AR|G|844
8P9A|1|AR|G|845
8P9A|1|AR|A|846
8P9A|1|AR|A|847
8P9A|1|AR|A|848
8P9A|1|AR|C|849

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain c3
40S ribosomal protein S13
Chain sR
Small subunit ribosomal RNA; SSU rRNA

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4142 s