HL_5FCI_137

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

5FCI|1|5|C|959, 5FCI|1|5|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_137 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.258

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

5FCI|1|5|C|958
5FCI|1|5|C|959
5FCI|1|5|U|960
5FCI|1|5|C|961
5FCI|1|5|A|962
5FCI|1|5|G|963

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n8

60S ribosomal protein L28

Chain n9

60S ribosomal protein L29

Chain q2

60S ribosomal protein L42-A