HL_8P9A_134

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8P9A|1|AR|C|959, 8P9A|1|AR|U|960, 8P9A|1|AR|C|961, 8P9A|1|AR|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8P9A|1|AR|C|958
8P9A|1|AR|C|959
8P9A|1|AR|U|960
8P9A|1|AR|C|961
8P9A|1|AR|A|962
8P9A|1|AR|G|963

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DC

60S ribosomal protein L28

Chain DD

60S ribosomal protein L29

Chain DQ

60S ribosomal protein L42-A