HL_5FCI_153

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_153 not in the Motif Atlas

Homologous match to HL_8P9A_149

Geometric discrepancy: 0.119

The information below is about HL_8P9A_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5FCI|1|5|G|1719
5FCI|1|5|U|1720
5FCI|1|5|U|1721
5FCI|1|5|U|1722
5FCI|1|5|A|1723
5FCI|1|5|U|1724
5FCI|1|5|C|1725

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain q3

60S ribosomal protein L43-A