HL_5FCI_230

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

5FCI|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_230 not in the Motif Atlas

Geometric match to HL_5TBW_227

Geometric discrepancy: 0.0798

The information below is about HL_5TBW_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02373.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5FCI|1|1|G|1262
5FCI|1|1|A|1263
5FCI|1|1|G|1264
5FCI|1|1|U|1265
5FCI|1|1|G|1266
5FCI|1|1|U|1267
5FCI|1|1|G|1268
5FCI|1|1|U|1269
5FCI|1|1|A|1270
5FCI|1|1|A|1271
5FCI|1|1|C|1272
5FCI|1|1|A|1273
5FCI|1|1|A|1274
5FCI|1|1|C|1275
5FCI|1|1|U|1276
5FCI|1|1|C|1277

Current chains

Chain 1

25S ribosomal RNA

Nearby chains