HL_5FCJ_007

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

5FCJ|1|1|G|218, 5FCJ|1|1|A|219, 5FCJ|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_007 not in the Motif Atlas

Homologous match to HL_8P9A_119

Geometric discrepancy: 0.0718

The information below is about HL_8P9A_119

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

5FCJ|1|1|G|216
5FCJ|1|1|U|217
5FCJ|1|1|G|218
5FCJ|1|1|A|219
5FCJ|1|1|G|220
5FCJ|1|1|A|221
5FCJ|1|1|A|222
5FCJ|1|1|U|223
5FCJ|1|1|C|224

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4-A

Chain N6

60S ribosomal protein L26-A