HL_8P9A_119

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8P9A|1|AR|G|218, 8P9A|1|AR|A|219, 8P9A|1|AR|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

8P9A|1|AR|G|216
8P9A|1|AR|U|217
8P9A|1|AR|G|218
8P9A|1|AR|A|219
8P9A|1|AR|G|220
8P9A|1|AR|A|221
8P9A|1|AR|A|222
8P9A|1|AR|U|223
8P9A|1|AR|C|224

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CF

60S ribosomal protein L4-A

Chain DA

60S ribosomal protein L26-A