HL_5FCJ_063

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

5FCJ|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_063 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.0905

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5FCJ|1|1|A|2897
5FCJ|1|1|G|2898
5FCJ|1|1|C|2899
5FCJ|1|1|A|2900
5FCJ|1|1|G|2901
5FCJ|1|1|A|2902
5FCJ|1|1|A|2903
5FCJ|1|1|U|2904

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L9

60S ribosomal protein L9-A

Chain Q0

Ubiquitin-60S ribosomal protein L40