HL_8P9A_173

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8P9A|1|AR|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8P9A|1|AR|A|2897
8P9A|1|AR|G|2898
8P9A|1|AR|C|2899
8P9A|1|AR|A|2900
8P9A|1|AR|G|2901
8P9A|1|AR|A|2902
8P9A|1|AR|A|2903
8P9A|1|AR|U|2904

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain DO

Ubiquitin-60S ribosomal protein L40