HL_5FCJ_080

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5FCJ|1|2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_080 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0911

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5FCJ|1|2|G|330
5FCJ|1|2|A|331
5FCJ|1|2|U|332
5FCJ|1|2|A|333
5FCJ|1|2|G|334
5FCJ|1|2|U|335
5FCJ|1|2|G|336
5FCJ|1|2|G|337
5FCJ|1|2|C|338

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain S8

40S ribosomal protein S8-A