HL_8C3A_199

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases (A, C, G, U)

335G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8C3A|1|CM|G|328
8C3A|1|CM|A|329
8C3A|1|CM|U|330
8C3A|1|CM|A|331
8C3A|1|CM|G|332
8C3A|1|CM|U|333
8C3A|1|CM|G|334
8C3A|1|CM|G|335
8C3A|1|CM|C|336

Current chains

Chain CM

18S

Nearby chains

Chain CV

40S ribosomal protein S8

Chain CY

40S ribosomal protein S11A