HL_5FCJ_118

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

5FCJ|1|5|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_118 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.0778

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5FCJ|1|5|U|194
5FCJ|1|5|U|195
5FCJ|1|5|G|196
5FCJ|1|5|G|197
5FCJ|1|5|A|198
5FCJ|1|5|A|199
5FCJ|1|5|C|200
5FCJ|1|5|A|201

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l4

60S ribosomal protein L4-A

Chain n6

60S ribosomal protein L26-A

Chain o2

60S ribosomal protein L32