HL_5FCJ_148

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

5FCJ|1|5|U|1606, 5FCJ|1|5|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_148 not in the Motif Atlas

Homologous match to HL_8P9A_146

Geometric discrepancy: 0.0551

The information below is about HL_8P9A_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5FCJ|1|5|G|1599
5FCJ|1|5|U|1600
5FCJ|1|5|U|1601
5FCJ|1|5|A|1602
5FCJ|1|5|A|1603
5FCJ|1|5|G|1604
5FCJ|1|5|A|1605
5FCJ|1|5|U|1606
5FCJ|1|5|U|1607
5FCJ|1|5|C|1608

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain n5

60S ribosomal protein L25

Chain o4

60S ribosomal protein L34-A