HL_5FCJ_188

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5FCJ|1|6|U|158, 5FCJ|1|6|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_188 not in the Motif Atlas

Homologous match to HL_8P9A_192

Geometric discrepancy: 0.1091

The information below is about HL_8P9A_192

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5FCJ|1|6|G|154
5FCJ|1|6|U|155
5FCJ|1|6|A|156
5FCJ|1|6|A|157
5FCJ|1|6|U|158
5FCJ|1|6|U|159
5FCJ|1|6|C|160

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s6

40S ribosomal protein S6-A