HL_5FCJ_215

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5FCJ|1|6|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_215 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.0917

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

5FCJ|1|6|C|1309
5FCJ|1|6|U|1310
5FCJ|1|6|U|1311
5FCJ|1|6|A|1312
5FCJ|1|6|A|1313
5FCJ|1|6|U|1314
5FCJ|1|6|U|1315
5FCJ|1|6|G|1316

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A