HL_8P9A_218

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8P9A|1|sR|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8P9A|1|sR|C|1309
8P9A|1|sR|U|1310
8P9A|1|sR|U|1311
8P9A|1|sR|A|1312
8P9A|1|sR|A|1313
8P9A|1|sR|U|1314
8P9A|1|sR|U|1315
8P9A|1|sR|G|1316

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A