HL_5FCJ_229

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

5FCJ|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_229 not in the Motif Atlas

Geometric match to HL_5TBW_227

Geometric discrepancy: 0.0809

The information below is about HL_5TBW_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02373.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5FCJ|1|1|G|1262
5FCJ|1|1|A|1263
5FCJ|1|1|G|1264
5FCJ|1|1|U|1265
5FCJ|1|1|G|1266
5FCJ|1|1|U|1267
5FCJ|1|1|G|1268
5FCJ|1|1|U|1269
5FCJ|1|1|A|1270
5FCJ|1|1|A|1271
5FCJ|1|1|C|1272
5FCJ|1|1|A|1273
5FCJ|1|1|A|1274
5FCJ|1|1|C|1275
5FCJ|1|1|U|1276
5FCJ|1|1|C|1277

Current chains

Chain 1

25S ribosomal RNA

Nearby chains