HL_5FDU_003
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAAC
- Length
- 6 nucleotides
- Bulged bases
- 5FDU|1|1A|G|123
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_15846.1
- Basepair signature
- cWW-R-R
- Number of instances in this motif group
- 5
Unit IDs
5FDU|1|1A|G|121
5FDU|1|1A|G|122
5FDU|1|1A|G|123
5FDU|1|1A|A|124
5FDU|1|1A|A|125
5FDU|1|1A|C|126
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1X
- 50S ribosomal protein L23
Coloring options: