HL_5FDU_011

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5FDU|1|1A|G|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69480.1

Basepair signature

cWW-R-R-tWH

Number of instances in this motif group

18

Unit IDs

5FDU|1|1A|G|351
5FDU|1|1A|U|352
5FDU|1|1A|G|353
5FDU|1|1A|A|354
5FDU|1|1A|A|355
5FDU|1|1A|A|356
5FDU|1|1A|G|357
5FDU|1|1A|C|358
5FDU|1|1A|C|359

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24