Motif HL_69480.1 Version HL_69480.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	1-6	2-3
1	HL_3F4H_005	3F4H	0.3131	2	T-loop with unstacked turn	Y	FMN riboswitch	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
2	HL_3F2Q_005	3F2Q	0.3229	2		X	FMN riboswitch (RFN element)	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
3	HL_5C45_004	5C45	0.3057	2	T-loop with unstacked turn	Y	FMN Riboswitch	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
4	HL_5C45_002	5C45	0.2283	2	T-loop with unstacked turn	X	FMN Riboswitch	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
5	HL_3F2Q_002	3F2Q	0.2126	2		X	FMN riboswitch (RFN element)	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
6	HL_3F4H_002	3F4H	0.2131	2	T-loop with unstacked turn	X	FMN riboswitch	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
7	HL_4FRG_003	4FRG	0.2828	3	T-loop with unstacked turn	B	Cobalamin riboswitch	G	58	U	59	A	63	C	64	U	65	C	66	cWW	tWH
8	HL_4FRN_007	4FRN	0.2268	3	T-loop with unstacked turn	B	Cobalamin riboswitch	G	56	U	57	A	61	C	62	U	63	C	64	cWW	tWH
9	HL_3J7P_007	3J7P	0.2191	3	T-loop with unstacked turn (H)	5	LSU rRNA	G	230	U	231	A	235	G	236	G	237	C	238	cWW
10	HL_3J9W_047	3J9W	0.1678	3	T-loop with unstacked turn (H)	BA	LSU rRNA	G	371	U	372	A	376	G	377	C	378	C	379	cWW	tWH
11	HL_3J79_007	3J79	0.1653	3	T-loop with unstacked turn (H)	A	LSU rRNA	G	224	U	225	A	229	G	230	G	231	C	232	cWW	tWH
12	HL_4V8P_167	4V8P	0.1218	3	T-loop with unstacked turn (H)	F1	LSU rRNA	G	216	U	217	A	221	A	222	C	223	C	224	cWW	tWH
13	HL_4V9F_012	4V9F	0.1156	3	T-loop with unstacked turn	0	LSU rRNA	G	334	U	335	A	339	A	340	C	341	C	342	cWW	tWH
14	HL_5FDU_011	5FDU	0.1067	3	T-loop with unstacked turn (H)	1A	LSU rRNA	G	351	U	352	A	356	G	357	C	358	C	359	cWW	tWH
15	HL_5J7L_144	5J7L	0.0000	3	T-loop with unstacked turn	DA	LSU rRNA	G	327	U	328	A	332	G	333	C	334	C	335	cWW	tWH
16	HL_4V88_120	4V88	0.1556	3	T-loop with unstacked turn (H)	A5	LSU rRNA	G	216	U	217	A	221	A	222	U	223	C	224	cWW	tWH
17	HL_4V91_007	4V91	0.1953	3	T-loop with unstacked turn (H)	1	LSU rRNA	G	216	U	217	A	221	A	222	U	223	C	224	cWW	tWH
18	HL_4IOA_011	4IOA	1.1385	3	T-loop with unstacked turn	X	LSU rRNA	G	338	U	339	A	343	G	344	U	345	C	346	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAGAGUC	3
GUAUAGUC	3
GUUAUACUC	2
GUGACAACC	2
GUGAGAAUC	2
GUGUGAGGC	1
GUAACAGCC	1
GUGAAAGGC	1
GUGAAAGCC	1
GUGACAGCC	1
GUGAGAGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAGAGU	3
UAUAGU	3
UUAUACU	2
UGACAAC	2
UGAGAAU	2
UGUGAGG	1
UAACAGC	1
UGAAAGG	1
UGAAAGC	1
UGACAGC	1
UGAGAGU	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with unstacked turn (9)
T-loop with unstacked turn (H) (7)
(2)
Basepair signature: cWW-R-R-tWH
Heat map statistics: Min 0.07 | Avg 0.34 | Max 1.21

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