HL_5FDU_020

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

5FDU|1|1A|C|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90745.1

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

24

Unit IDs

5FDU|1|1A|C|666
5FDU|1|1A|G|667
5FDU|1|1A|A|668
5FDU|1|1A|A|669
5FDU|1|1A|C|670
5FDU|1|1A|A|671
5FDU|1|1A|G|672

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15