Motif HL_90745.1 Version HL_90745.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J79_072 | 3J79 | 0.6724 | 0 | GNRA variation (H) | C | 5.8S rRNA | U | 77 | U | 78 | G | 79 | C | 80 | A | 81 | G | 82 | cWW | |
| 2 | HL_4V8P_212 | 4V8P | 0.4417 | 0 | F1 | LSU rRNA | U | 2531 | G | 2532 | C | 2533 | A | 2534 | A | 2535 | A | 2536 | cWW | ntSH | |
| 3 | HL_4IOA_004 | 4IOA | 0.6312 | 0 | GNRA variation | X | LSU rRNA | C | 133 | G | 134 | U | 135 | A | 136 | A | 137 | G | 138 | cWW | ntSH |
| 4 | HL_3JB9_003 | 3JB9 | 0.5740 | 1 | GNRA (H) | N | U6 snRNA | U | 58 | G | 59 | C | 60 | A | 61 | A | 63 | A | 64 | cWW | |
| 5 | HL_5LJ3_002 | 5LJ3 | 0.5359 | 1 | GNRA (H) | V | U6 snRNA | U | 70 | G | 71 | C | 72 | A | 73 | A | 75 | A | 76 | cWW | |
| 6 | HL_4V9F_016 | 4V9F | 0.3341 | 1 | GNRA | 0 | LSU rRNA | U | 493 | C | 494 | A | 495 | G | 496 | A | 498 | G | 499 | cWW | ntSH |
| 7 | HL_4V8P_201 | 4V8P | 0.2985 | 1 | GNRA (H) | F1 | LSU rRNA | U | 1886 | U | 1887 | A | 1888 | G | 1889 | A | 1891 | G | 1892 | cWW | ntSH |
| 8 | HL_3J79_042 | 3J79 | 0.2986 | 1 | GNRA (H) | A | LSU rRNA | U | 2129 | U | 2130 | A | 2131 | A | 2132 | A | 2134 | G | 2135 | cWW | ntSH |
| 9 | HL_4V91_042 | 4V91 | 0.3149 | 1 | GNRA (H) | 1 | LSU rRNA | U | 1862 | G | 1863 | A | 1864 | A | 1865 | A | 1867 | G | 1868 | cWW | ntSH |
| 10 | HL_4V88_155 | 4V88 | 0.3038 | 1 | GNRA (H) | A5 | LSU rRNA | U | 1862 | G | 1863 | A | 1864 | A | 1865 | A | 1867 | G | 1868 | cWW | tSH |
| 11 | HL_3J7P_043 | 3J7P | 0.2892 | 1 | GNRA (H) | 5 | LSU rRNA | U | 2810 | G | 2811 | A | 2812 | A | 2813 | A | 2815 | G | 2816 | cWW | |
| 12 | HL_5AJ0_046 | 5AJ0 | 0.2922 | 1 | GNRA (H) | A2 | LSU rRNA | U | 2789 | G | 2790 | A | 2791 | A | 2792 | A | 2794 | G | 2795 | cWW | tSH |
| 13 | HL_4BTS_139 | 4BTS | 0.1873 | 1 | DA | SSU rRNA | U | 1330 | A | 1331 | A | 1332 | A | 1333 | A | 1335 | A | 1336 | cWW | ntSH | |
| 14 | HL_5J7L_174 | 5J7L | 0.0000 | 1 | GNRA | DA | LSU rRNA | A | 1630 | G | 1631 | A | 1632 | G | 1633 | A | 1635 | U | 1636 | cWW | tSH |
| 15 | HL_3J9W_077 | 3J9W | 0.1265 | 1 | GNRA (H) | BA | LSU rRNA | A | 1675 | G | 1676 | A | 1677 | G | 1678 | A | 1680 | U | 1681 | cWW | ntSH |
| 16 | HL_1XJR_001 | 1XJR | 0.1972 | 1 | GNRA | A | s2m RNA | G | 21 | G | 22 | A | 23 | G | 24 | A | 26 | C | 27 | cWW | tSH |
| 17 | HL_5FDU_020 | 5FDU | 0.2382 | 1 | 1A | LSU rRNA | C | 666 | G | 667 | A | 668 | A | 669 | A | 671 | G | 672 | cWW | ntSH | |
| 18 | HL_3JCS_034 | 3JCS | 0.3219 | 1 | GNRA (H) | 2 | LSU rRNA | A | 45 | U | 46 | A | 47 | G | 48 | A | 50 | U | 51 | cWW | ntSH |
| 19 | HL_3Q1Q_010 | 3Q1Q | 0.5854 | 0 | C | TRNA (PHE) | G | 37 | C | 38 | A | 39 | C | 40 | C | 41 | C | 42 | cWW | ntWH | |
| 20 | HL_3J9W_056 | 3J9W | 0.5532 | 1 | BA | LSU rRNA | U | 687 | G | 688 | A | 689 | A | 690 | A | 692 | G | 693 | cWW | tSH | |
| 21 | HL_3D0U_003 | 3D0U | 0.4960 | 1 | GNRA | A | Lysine Riboswitch RNA | G | 121 | G | 122 | A | 123 | A | 124 | A | 126 | C | 127 | cWW | tSH |
| 22 | HL_4IOA_045 | 4IOA | 0.5645 | 1 | GNRA | X | LSU rRNA | C | 1797 | G | 1798 | A | 1799 | A | 1800 | A | 1802 | G | 1803 | cWW | tSH |
| 23 | HL_4QLM_001 | 4QLM | 0.7883 | 0 | GNRA | A | cyclic di-AMP riboswitch | C | 54 | G | 55 | A | 56 | A | 57 | A | 58 | G | 59 | cWW | ntSH |
| 24 | HL_3J9W_083 | 3J9W | 0.7286 | 0 | GNRA (H) | BA | LSU rRNA | C | 1897 | G | 1898 | U | 1899 | A | 1900 | A | 1901 | G | 1902 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAACAG | 4 |
| CGUAAG | 2 |
| AGAGAAU | 2 |
| CGAACAG | 2 |
| UUGCAG | 1 |
| UGCAAA | 1 |
| UGCACAA | 1 |
| UGCAUAA | 1 |
| UCAGAAG | 1 |
| UUAGCAG | 1 |
| UUAACAG | 1 |
| UAAAUAA | 1 |
| GGAGUAC | 1 |
| AUAGAAU | 1 |
| GCACCC | 1 |
| UGAAUAG | 1 |
| GGAAUAC | 1 |
| CGAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACA | 6 |
| GUAA | 2 |
| GAGAA | 2 |
| GAAUA | 2 |
| UGCA | 1 |
| GCAA | 1 |
| GCACA | 1 |
| GCAUA | 1 |
| CAGAA | 1 |
| UAGCA | 1 |
| UAACA | 1 |
| AAAUA | 1 |
| GAGUA | 1 |
| UAGAA | 1 |
| CACC | 1 |
| GAAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA (H) (11)
- GNRA (6)
- (5)
- GNRA variation (H) (1)
- GNRA variation (1)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.09 | Avg 0.54 | Max 1.00
Coloring options: