HL_5FDU_025

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

5FDU|1|1A|A|934, 5FDU|1|1A|C|935

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08566.1

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

2

Unit IDs

5FDU|1|1A|C|931
5FDU|1|1A|C|932
5FDU|1|1A|C|933
5FDU|1|1A|A|934
5FDU|1|1A|C|935
5FDU|1|1A|C|936
5FDU|1|1A|A|937
5FDU|1|1A|G|938

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13