HL_5FDU_035

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5FDU|1|1A|U|1442, 5FDU|1|1A|U|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55197.1

Basepair signature

cWW-tWH-R-tSH-R

Number of instances in this motif group

15

Unit IDs

5FDU|1|1A|G|1435
5FDU|1|1A|U|1436
5FDU|1|1A|U|1437
5FDU|1|1A|A|1438
5FDU|1|1A|A|1439
5FDU|1|1A|U|1440
5FDU|1|1A|A|1441
5FDU|1|1A|U|1442
5FDU|1|1A|U|1443
5FDU|1|1A|C|1444

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23