3D structure

PDB id
5FDU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CAUGGACG
Length
8 nucleotides
Bulged bases
5FDU|1|1A|U|1501
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_26177.1
Basepair signature
cWW-R-R-R-R
Number of instances in this motif group
2

Unit IDs

5FDU|1|1A|C|1499
5FDU|1|1A|A|1500
5FDU|1|1A|U|1501
5FDU|1|1A|G|1502
5FDU|1|1A|G|1503
5FDU|1|1A|A|1504
5FDU|1|1A|C|1505
5FDU|1|1A|G|1506

Current chains

Chain 1A
23S ribosomal RNA

Nearby chains

Chain 1R
50S ribosomal protein L17

Coloring options:

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