Motif HL_26177.1 Version HL_26177.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5FDU_036 | 5FDU | 0.0000 | 1 | 1A | LSU rRNA | C | 1499 | A | 1500 | G | 1502 | G | 1503 | A | 1504 | C | 1505 | G | 1506 | cWW | |
| 2 | HL_5J7L_169 | 5J7L | 0.7664 | 2 | Mini UNCG with extended bulge | DA | LSU rRNA | C | 1451 | G | 1452 | G | 1455 | G | 1456 | U | 1457 | U | 1458 | G | 1459 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGGACG | 1 |
| CGACGGUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGGAC | 1 |
| GACGGUU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Mini UNCG with extended bulge (1)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.77 | Avg 0.38 | Max 0.77
Coloring options: