HL_5FDU_039

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5FDU|1|1A|A|1660, 5FDU|1|1A|A|1662, 5FDU|1|1A|A|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55724.1

Basepair signature

cWW-R-R

Number of instances in this motif group

18

Unit IDs

5FDU|1|1A|C|1658
5FDU|1|1A|G|1659
5FDU|1|1A|A|1660
5FDU|1|1A|C|1661
5FDU|1|1A|A|1662
5FDU|1|1A|C|1663
5FDU|1|1A|A|1664
5FDU|1|1A|G|1665

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1W

50S ribosomal protein L22