HL_5FDU_044

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5FDU|1|1A|A|1811, 5FDU|1|1A|C|1812, 5FDU|1|1A|C|1813, 5FDU|1|1A|A|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77780.1

Basepair signature

cWW-tWH-tWH-R

Number of instances in this motif group

13

Unit IDs

5FDU|1|1A|U|1808
5FDU|1|1A|U|1809
5FDU|1|1A|U|1810
5FDU|1|1A|A|1811
5FDU|1|1A|C|1812
5FDU|1|1A|C|1813
5FDU|1|1A|A|1814
5FDU|1|1A|A|1815
5FDU|1|1A|A|1816
5FDU|1|1A|A|1817
5FDU|1|1A|A|1818

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2

Chain 1W

50S ribosomal protein L22