Motif HL_77780.1 Version HL_77780.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_047 | 4V9F | 0.1162 | 4 | 0 | LSU rRNA | U | 1833 | C | 1834 | U | 1835 | A | 1839 | A | 1840 | C | 1841 | A | 1843 | cWW | tWH | tWH |
| 2 | HL_3J79_046 | 3J79 | 0.1114 | 4 | A | LSU rRNA | U | 2428 | U | 2429 | U | 2430 | U | 2434 | A | 2435 | A | 2436 | A | 2438 | cWW | tWH | tWH |
| 3 | HL_5J7L_178 | 5J7L | 0.0000 | 4 | DA | LSU rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH |
| 4 | HL_5FDU_044 | 5FDU | 0.0790 | 4 | 1A | LSU rRNA | U | 1808 | U | 1809 | U | 1810 | A | 1814 | A | 1815 | A | 1816 | A | 1818 | cWW | tWH | tWH |
| 5 | HL_4V19_021 | 4V19 | 0.1124 | 4 | A | LSU rRNA | U | 827 | U | 828 | U | 829 | A | 833 | A | 834 | A | 835 | A | 837 | cWW | tWH | tWH |
| 6 | HL_4V88_159 | 4V88 | 0.1868 | 4 | A5 | LSU rRNA | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | tWH | tWH |
| 7 | HL_4V91_046 | 4V91 | 0.1557 | 4 | 1 | LSU rRNA | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | ntWH | ntWH |
| 8 | HL_5AN9_007 | 5AN9 | 0.1744 | 4 | N | LSU rRNA | U | 2402 | U | 2403 | U | 2404 | U | 2408 | A | 2409 | A | 2410 | A | 2412 | cWW | tWH | ntWH |
| 9 | HL_3J7Y_022 | 3J7Y | 0.1452 | 4 | A | LSU rRNA | U | 2497 | U | 2498 | U | 2499 | A | 2503 | A | 2504 | A | 2505 | A | 2507 | cWW | tWH | tWH |
| 10 | HL_3J7P_046 | 3J7P | 0.4531 | 4 | 5 | LSU rRNA | U | 3639 | U | 3640 | U | 3641 | U | 3645 | A | 3646 | A | 3647 | A | 3649 | cWW | tWH | |
| 11 | HL_4V8P_205 | 4V8P | 0.4105 | 4 | F1 | LSU rRNA | U | 2131 | U | 2132 | U | 2133 | A | 2137 | A | 2138 | A | 2139 | A | 2141 | cWW | tWH | |
| 12 | HL_3J9W_081 | 3J9W | 0.4807 | 4 | BA | LSU rRNA | U | 1806 | U | 1807 | U | 1808 | A | 1812 | A | 1813 | A | 1814 | A | 1816 | cWW | tWH | |
| 13 | HL_5AJ0_050 | 5AJ0 | 0.5954 | 4 | A2 | LSU rRNA | U | 3610 | U | 3611 | U | 3612 | U | 3616 | A | 3617 | A | 3618 | A | 3620 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAAUUAAAA | 4 |
| UUUACCAAAAA | 3 |
| UCUAAUUAAAA | 2 |
| UCUAGUAACAA | 1 |
| UUUAUUAAAAA | 1 |
| UUUAAUAAAAA | 1 |
| UUUAGCAAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUUAAA | 4 |
| UUACCAAAA | 3 |
| CUAAUUAAA | 2 |
| CUAGUAACA | 1 |
| UUAUUAAAA | 1 |
| UUAAUAAAA | 1 |
| UUAGCAAAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (13)
- Basepair signature
- cWW-tWH-tWH-R
- Heat map statistics
- Min 0.08 | Avg 0.30 | Max 0.62
Coloring options: