HL_5FDU_050

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

5FDU|1|1A|C|2167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_050 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.29

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5FDU|1|1A|C|2165
5FDU|1|1A|U|2166
5FDU|1|1A|C|2167
5FDU|1|1A|C|2168
5FDU|1|1A|G|2169
5FDU|1|1A|G|2170

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains