HL_5FDU_053

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5FDU|1|1A|A|2280, 5FDU|1|1A|C|2287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38117.1

Basepair signature

cWW-tSH-tHH-tWW-R-R-R

Number of instances in this motif group

15

Unit IDs

5FDU|1|1A|C|2276
5FDU|1|1A|U|2277
5FDU|1|1A|A|2278
5FDU|1|1A|A|2279
5FDU|1|1A|A|2280
5FDU|1|1A|A|2281
5FDU|1|1A|G|2282
5FDU|1|1A|G|2283
5FDU|1|1A|U|2284
5FDU|1|1A|A|2285
5FDU|1|1A|A|2286
5FDU|1|1A|C|2287
5FDU|1|1A|G|2288

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25