Motif HL_38117.1 Version HL_38117.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-7 | 4-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7P_056 | 3J7P | 0.2299 | 2 | 5 | LSU rRNA | U | 4210 | C | 4211 | A | 4212 | A | 4213 | C | 4215 | G | 4216 | G | 4217 | U | 4218 | A | 4219 | A | 4220 | G | 4222 | ncWW | tHH | ntWW | ||
| 2 | HL_3JCS_048 | 3JCS | 0.1599 | 2 | 2 | LSU rRNA | U | 1061 | U | 1062 | A | 1063 | C | 1064 | C | 1066 | G | 1067 | A | 1068 | C | 1069 | A | 1070 | A | 1071 | G | 1073 | ncWW | ntSH | tHH | ntWWa | |
| 3 | HL_4IOA_053 | 4IOA | 0.0947 | 2 | X | LSU rRNA | C | 2243 | C | 2244 | A | 2245 | A | 2246 | A | 2248 | U | 2249 | G | 2250 | U | 2251 | A | 2252 | A | 2253 | G | 2255 | cWW | ntSH | tHH | tWW | |
| 4 | HL_5FDU_053 | 5FDU | 0.0000 | 2 | 1A | LSU rRNA | C | 2276 | U | 2277 | A | 2278 | A | 2279 | A | 2281 | G | 2282 | G | 2283 | U | 2284 | A | 2285 | A | 2286 | G | 2288 | cWW | ntSH | tHH | tWW | |
| 5 | HL_5J7L_187 | 5J7L | 0.0775 | 2 | DA | LSU rRNA | C | 2264 | U | 2265 | A | 2266 | A | 2267 | G | 2269 | A | 2270 | G | 2271 | U | 2272 | A | 2273 | A | 2274 | G | 2276 | cWW | ntSH | tHH | tWW | |
| 6 | HL_4V9F_056 | 4V9F | 0.1465 | 2 | 0 | LSU rRNA | C | 2298 | G | 2299 | A | 2300 | A | 2301 | A | 2303 | G | 2304 | A | 2305 | U | 2306 | A | 2307 | U | 2308 | G | 2310 | cWW | tSH | tHH | tWW | |
| 7 | HL_5AN9_015 | 5AN9 | 0.1547 | 2 | N | LSU rRNA | U | 2966 | U | 2967 | A | 2968 | A | 2969 | A | 2971 | G | 2972 | A | 2973 | U | 2974 | A | 2975 | A | 2976 | G | 2978 | cWW | ntSH | tHH | tWW | |
| 8 | HL_3J79_055 | 3J79 | 0.1613 | 2 | A | LSU rRNA | U | 2972 | U | 2973 | A | 2974 | A | 2975 | U | 2977 | A | 2978 | U | 2979 | U | 2980 | A | 2981 | A | 2982 | G | 2984 | cWW | ntSH | tHH | tWW | |
| 9 | HL_4V88_169 | 4V88 | 0.1720 | 2 | A5 | LSU rRNA | U | 2633 | U | 2634 | A | 2635 | A | 2636 | C | 2638 | G | 2639 | A | 2640 | U | 2641 | A | 2642 | A | 2643 | G | 2645 | cWW | ntSH | tHH | tWW | |
| 10 | HL_4V91_056 | 4V91 | 0.1746 | 2 | 1 | LSU rRNA | U | 2633 | U | 2634 | A | 2635 | A | 2636 | C | 2638 | G | 2639 | A | 2640 | U | 2641 | A | 2642 | A | 2643 | G | 2645 | cWW | ntSH | ntHH | tWW | |
| 11 | HL_5AJ0_059 | 5AJ0 | 0.1593 | 2 | A2 | LSU rRNA | U | 4172 | C | 4173 | A | 4174 | A | 4175 | C | 4177 | G | 4178 | G | 4179 | U | 4180 | A | 4181 | A | 4182 | G | 4184 | cWW | ntSH | tHH | ntWW | |
| 12 | HL_4V8P_215 | 4V8P | 0.2177 | 2 | F1 | LSU rRNA | U | 2622 | U | 2623 | A | 2624 | A | 2625 | C | 2627 | C | 2628 | A | 2629 | U | 2630 | A | 2631 | A | 2632 | G | 2634 | cWW | ntSH | tHH | tWW | |
| 13 | HL_3J9W_090 | 3J9W | 0.3034 | 2 | BA | LSU rRNA | C | 2293 | U | 2294 | A | 2295 | A | 2296 | A | 2298 | G | 2299 | G | 2300 | U | 2301 | A | 2302 | A | 2303 | G | 2305 | cWW | ntSH | ntHH | ncHH | |
| 14 | HL_4V19_029 | 4V19 | 0.8461 | 2 | A | LSU rRNA | G | 1162 | U | 1163 | A | 1164 | C | 1165 | A | 1167 | A | 1168 | A | 1169 | A | 1170 | A | 1171 | C | 1172 | C | 1174 | cWW | tHH | |||
| 15 | HL_3J7Y_030 | 3J7Y | 0.9258 | 2 | A | LSU rRNA | G | 2828 | C | 2829 | A | 2830 | G | 2831 | A | 2833 | C | 2834 | C | 2835 | C | 2836 | A | 2837 | A | 2838 | C | 2840 | cWW | tHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAAACGGUAACG | 2 |
| CUAAAAGGUAACG | 2 |
| UUAAACGAUAACG | 2 |
| UUACACGACAACG | 1 |
| CCAAAAUGUAACG | 1 |
| CUAAAGAGUAACG | 1 |
| CGAAAAGAUAUCG | 1 |
| UUAAAAGAUAACG | 1 |
| UUAAAUAUUAACG | 1 |
| UUAAACCAUAACG | 1 |
| GUACAAAAAACCC | 1 |
| GCAGAACCCAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAACGGUAAC | 2 |
| UAAAAGGUAAC | 2 |
| UAAACGAUAAC | 2 |
| UACACGACAAC | 1 |
| CAAAAUGUAAC | 1 |
| UAAAGAGUAAC | 1 |
| GAAAAGAUAUC | 1 |
| UAAAAGAUAAC | 1 |
| UAAAUAUUAAC | 1 |
| UAAACCAUAAC | 1 |
| UACAAAAAACC | 1 |
| CAGAACCCAAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (15)
- Basepair signature
- cWW-tSH-tHH-tWW-R-R-R
- Heat map statistics
- Min 0.08 | Avg 0.35 | Max 0.99
Coloring options: