HL_5FDU_054

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87601.1

Basepair signature

cWW-R-R-R-R-R-R-R-R

Number of instances in this motif group

4

Unit IDs

5FDU|1|1A|G|2315
5FDU|1|1A|G|2316
5FDU|1|1A|A|2317
5FDU|1|1A|C|2318
5FDU|1|1A|G|2319
5FDU|1|1A|G|2320
5FDU|1|1A|A|2321
5FDU|1|1A|A|2322
5FDU|1|1A|A|2323
5FDU|1|1A|U|2324
5FDU|1|1A|C|2325

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1G

50S ribosomal protein L5