Motif HL_87601.1 Version HL_87601.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 6-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5AN9_016 | 5AN9 | 0.4759 | 0 | N | LSU rRNA | G | 3005 | A | 3006 | A | 3007 | C | 3008 | A | 3009 | G | 3010 | A | 3011 | A | 3012 | A | 3013 | U | 3014 | C | 3015 | cWW | ncWW | cWH |
| 2 | HL_5J7L_188 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 2303 | G | 2304 | U | 2305 | C | 2306 | G | 2307 | G | 2308 | A | 2309 | C | 2310 | A | 2311 | U | 2312 | C | 2313 | cWW | ncWWa | ncWH |
| 3 | HL_5FDU_054 | 5FDU | 0.3094 | 0 | 1A | LSU rRNA | G | 2315 | G | 2316 | A | 2317 | C | 2318 | G | 2319 | G | 2320 | A | 2321 | A | 2322 | A | 2323 | U | 2324 | C | 2325 | cWW | ncWWa | |
| 4 | HL_3J9W_091 | 3J9W | 0.5068 | 0 | BA | LSU rRNA | G | 2332 | G | 2333 | U | 2334 | U | 2335 | G | 2336 | G | 2337 | A | 2338 | A | 2339 | A | 2340 | U | 2341 | C | 2342 | cWW | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACAGAAAUC | 1 |
| GGUCGGACAUC | 1 |
| GGACGGAAAUC | 1 |
| GGUUGGAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACAGAAAU | 1 |
| GUCGGACAU | 1 |
| GACGGAAAU | 1 |
| GUUGGAAAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.31 | Avg 0.39 | Max 0.69
Coloring options: