HL_5FDU_065

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5FDU|1|1A|G|2764, 5FDU|1|1A|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69076.1

Basepair signature

cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

5FDU|1|1A|C|2758
5FDU|1|1A|U|2759
5FDU|1|1A|G|2760
5FDU|1|1A|A|2761
5FDU|1|1A|A|2762
5FDU|1|1A|A|2763
5FDU|1|1A|G|2764
5FDU|1|1A|C|2765
5FDU|1|1A|A|2766
5FDU|1|1A|U|2767
5FDU|1|1A|C|2768
5FDU|1|1A|U|2769
5FDU|1|1A|A|2770
5FDU|1|1A|A|2771
5FDU|1|1A|G|2772

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13