HL_5FDU_067

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5FDU|1|1A|A|2830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57089.1

Basepair signature

cWW-cSW-R-R-R-R

Number of instances in this motif group

13

Unit IDs

5FDU|1|1A|G|2829
5FDU|1|1A|A|2830
5FDU|1|1A|A|2831
5FDU|1|1A|G|2832
5FDU|1|1A|A|2833
5FDU|1|1A|C|2834
5FDU|1|1A|C|2835
5FDU|1|1A|A|2836
5FDU|1|1A|C|2837

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19