RNA 3D Hub //

Motif HL_57089.1 Version HL_57089.1 of this group appears in releases 2.0 to 2.0

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 81-82-7
1 HL_3JCS_0643JCS0.42831526S epsilon ribosomal RNAC12A14A15A16C17G18A19G20cWWcSW
2 HL_4V91_0714V910.384611 LSU rRNAG3303A3305U3306A3307C3308G3309A3310C3311cWWcSW
3 HL_5AJ0_0735AJ00.39981A2 LSU rRNAG4933A4935G4936A4937C4938G4939A4940C4941cWWcSW
4 HL_3J9W_1043J9W0.15341BA LSU rRNAA2844A2846G2847A2848U2849G2850A2851U2852cWWcSW
5 HL_3J79_0683J790.12831A LSU rRNAG3697A3699G3700A3701C3702G3703A3704C3705cWWcSW
6 HL_5J7L_2015J7L0.13341DA LSU rRNAG2819A2821G2822A2823C2824G2825A2826C2827cWWcSW
7 HL_4V8P_2304V8P0.00001F1 LSU rRNAG3263A3265G3266A3267C3268G3269A3270C3271cWWcSW
8 HL_4V88_1844V880.18901A5 LSU rRNAG3303A3305U3306A3307C3308G3309A3310C3311cWWcSW
9 HL_4V9F_0694V9F0.338410 LSU rRNAG2836A2838C2839A2840A2841G2842A2843C2844cWWcSW
10 HL_5FDU_0675FDU0.393211A LSU rRNAG2829A2831G2832A2833C2834C2835A2836C2837cWWcSW
11 HL_4IOA_0674IOA0.41391X LSU rRNAG2794A2796G2797A2798C2799C2800A2801C2802cWWcSW
12 HL_3J7Y_0403J7Y0.43071A LSU rRNAC3216A3218G3219A3220A3221C3222A3223G3224cWWcSW
13 HL_4V19_0404V190.45871A LSU rRNAC1555A1557G1558A1559A1560C1561A1562G1563cWWcSW

3D structures

Complete motif including flanking bases
SequenceCounts
GUAGACGAC3
GUAUACGAC2
GAAGACCAC2
CCAAACGAG1
AAAGAUGAU1
GAAGACGAC1
GUACAAGAC1
CAAGAACAG1
CUAGAACAG1
Non-Watson-Crick part of the motif
SequenceCounts
UAGACGA3
UAUACGA2
AAGACCA2
CAAACGA1
AAGAUGA1
AAGACGA1
UACAAGA1
AAGAACA1
UAGAACA1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (13)
    • Basepair signature
    cWW-cSW-R-R-R-R
    Heat map statistics
    Min 0.10 | Avg 0.36 | Max 0.65
    Help

    Coloring options:

    HL_3JCS_064:HL_3JCS_064 = 0HL_3JCS_064:HL_4V91_071 = 0.2271HL_3JCS_064:HL_5AJ0_073 = 0.3392HL_3JCS_064:HL_3J9W_104 = 0.4507HL_3JCS_064:HL_3J79_068 = 0.4597HL_3JCS_064:HL_5J7L_201 = 0.4551HL_3JCS_064:HL_4V8P_230 = 0.4283HL_3JCS_064:HL_4V88_184 = 0.4243HL_3JCS_064:HL_4V9F_069 = 0.5064HL_3JCS_064:HL_5FDU_067 = 0.5717HL_3JCS_064:HL_4IOA_067 = 0.556HL_3JCS_064:HL_3J7Y_040 = 0.5575HL_3JCS_064:HL_4V19_040 = 0.583HL_4V91_071:HL_3JCS_064 = 0.2271HL_4V91_071:HL_4V91_071 = 0HL_4V91_071:HL_5AJ0_073 = 0.2136HL_4V91_071:HL_3J9W_104 = 0.3839HL_4V91_071:HL_3J79_068 = 0.3867HL_4V91_071:HL_5J7L_201 = 0.3842HL_4V91_071:HL_4V8P_230 = 0.3846HL_4V91_071:HL_4V88_184 = 0.3791HL_4V91_071:HL_4V9F_069 = 0.469HL_4V91_071:HL_5FDU_067 = 0.5376HL_4V91_071:HL_4IOA_067 = 0.5279HL_4V91_071:HL_3J7Y_040 = 0.5666HL_4V91_071:HL_4V19_040 = 0.5997HL_5AJ0_073:HL_3JCS_064 = 0.3392HL_5AJ0_073:HL_4V91_071 = 0.2136HL_5AJ0_073:HL_5AJ0_073 = 0HL_5AJ0_073:HL_3J9W_104 = 0.3959HL_5AJ0_073:HL_3J79_068 = 0.4034HL_5AJ0_073:HL_5J7L_201 = 0.3791HL_5AJ0_073:HL_4V8P_230 = 0.3998HL_5AJ0_073:HL_4V88_184 = 0.4496HL_5AJ0_073:HL_4V9F_069 = 0.5153HL_5AJ0_073:HL_5FDU_067 = 0.5623HL_5AJ0_073:HL_4IOA_067 = 0.5487HL_5AJ0_073:HL_3J7Y_040 = 0.6063HL_5AJ0_073:HL_4V19_040 = 0.6458HL_3J9W_104:HL_3JCS_064 = 0.4507HL_3J9W_104:HL_4V91_071 = 0.3839HL_3J9W_104:HL_5AJ0_073 = 0.3959HL_3J9W_104:HL_3J9W_104 = 0HL_3J9W_104:HL_3J79_068 = 0.1021HL_3J9W_104:HL_5J7L_201 = 0.1208HL_3J9W_104:HL_4V8P_230 = 0.1534HL_3J9W_104:HL_4V88_184 = 0.2194HL_3J9W_104:HL_4V9F_069 = 0.3523HL_3J9W_104:HL_5FDU_067 = 0.3824HL_3J9W_104:HL_4IOA_067 = 0.3961HL_3J9W_104:HL_3J7Y_040 = 0.4548HL_3J9W_104:HL_4V19_040 = 0.4954HL_3J79_068:HL_3JCS_064 = 0.4597HL_3J79_068:HL_4V91_071 = 0.3867HL_3J79_068:HL_5AJ0_073 = 0.4034HL_3J79_068:HL_3J9W_104 = 0.1021HL_3J79_068:HL_3J79_068 = 0HL_3J79_068:HL_5J7L_201 = 0.1023HL_3J79_068:HL_4V8P_230 = 0.1283HL_3J79_068:HL_4V88_184 = 0.1781HL_3J79_068:HL_4V9F_069 = 0.3548HL_3J79_068:HL_5FDU_067 = 0.4103HL_3J79_068:HL_4IOA_067 = 0.4115HL_3J79_068:HL_3J7Y_040 = 0.4705HL_3J79_068:HL_4V19_040 = 0.5124HL_5J7L_201:HL_3JCS_064 = 0.4551HL_5J7L_201:HL_4V91_071 = 0.3842HL_5J7L_201:HL_5AJ0_073 = 0.3791HL_5J7L_201:HL_3J9W_104 = 0.1208HL_5J7L_201:HL_3J79_068 = 0.1023HL_5J7L_201:HL_5J7L_201 = 0HL_5J7L_201:HL_4V8P_230 = 0.1334HL_5J7L_201:HL_4V88_184 = 0.2146HL_5J7L_201:HL_4V9F_069 = 0.335HL_5J7L_201:HL_5FDU_067 = 0.3958HL_5J7L_201:HL_4IOA_067 = 0.4113HL_5J7L_201:HL_3J7Y_040 = 0.4729HL_5J7L_201:HL_4V19_040 = 0.5106HL_4V8P_230:HL_3JCS_064 = 0.4283HL_4V8P_230:HL_4V91_071 = 0.3846HL_4V8P_230:HL_5AJ0_073 = 0.3998HL_4V8P_230:HL_3J9W_104 = 0.1534HL_4V8P_230:HL_3J79_068 = 0.1283HL_4V8P_230:HL_5J7L_201 = 0.1334HL_4V8P_230:HL_4V8P_230 = 0HL_4V8P_230:HL_4V88_184 = 0.189HL_4V8P_230:HL_4V9F_069 = 0.3384HL_4V8P_230:HL_5FDU_067 = 0.3932HL_4V8P_230:HL_4IOA_067 = 0.4139HL_4V8P_230:HL_3J7Y_040 = 0.4307HL_4V8P_230:HL_4V19_040 = 0.4587HL_4V88_184:HL_3JCS_064 = 0.4243HL_4V88_184:HL_4V91_071 = 0.3791HL_4V88_184:HL_5AJ0_073 = 0.4496HL_4V88_184:HL_3J9W_104 = 0.2194HL_4V88_184:HL_3J79_068 = 0.1781HL_4V88_184:HL_5J7L_201 = 0.2146HL_4V88_184:HL_4V8P_230 = 0.189HL_4V88_184:HL_4V88_184 = 0HL_4V88_184:HL_4V9F_069 = 0.2716HL_4V88_184:HL_5FDU_067 = 0.4221HL_4V88_184:HL_4IOA_067 = 0.4264HL_4V88_184:HL_3J7Y_040 = 0.4356HL_4V88_184:HL_4V19_040 = 0.4648HL_4V9F_069:HL_3JCS_064 = 0.5064HL_4V9F_069:HL_4V91_071 = 0.469HL_4V9F_069:HL_5AJ0_073 = 0.5153HL_4V9F_069:HL_3J9W_104 = 0.3523HL_4V9F_069:HL_3J79_068 = 0.3548HL_4V9F_069:HL_5J7L_201 = 0.335HL_4V9F_069:HL_4V8P_230 = 0.3384HL_4V9F_069:HL_4V88_184 = 0.2716HL_4V9F_069:HL_4V9F_069 = 0HL_4V9F_069:HL_5FDU_067 = 0.4492HL_4V9F_069:HL_4IOA_067 = 0.4767HL_4V9F_069:HL_3J7Y_040 = 0.4448HL_4V9F_069:HL_4V19_040 = 0.4701HL_5FDU_067:HL_3JCS_064 = 0.5717HL_5FDU_067:HL_4V91_071 = 0.5376HL_5FDU_067:HL_5AJ0_073 = 0.5623HL_5FDU_067:HL_3J9W_104 = 0.3824HL_5FDU_067:HL_3J79_068 = 0.4103HL_5FDU_067:HL_5J7L_201 = 0.3958HL_5FDU_067:HL_4V8P_230 = 0.3932HL_5FDU_067:HL_4V88_184 = 0.4221HL_5FDU_067:HL_4V9F_069 = 0.4492HL_5FDU_067:HL_5FDU_067 = 0HL_5FDU_067:HL_4IOA_067 = 0.1234HL_5FDU_067:HL_3J7Y_040 = 0.216HL_5FDU_067:HL_4V19_040 = 0.2813HL_4IOA_067:HL_3JCS_064 = 0.556HL_4IOA_067:HL_4V91_071 = 0.5279HL_4IOA_067:HL_5AJ0_073 = 0.5487HL_4IOA_067:HL_3J9W_104 = 0.3961HL_4IOA_067:HL_3J79_068 = 0.4115HL_4IOA_067:HL_5J7L_201 = 0.4113HL_4IOA_067:HL_4V8P_230 = 0.4139HL_4IOA_067:HL_4V88_184 = 0.4264HL_4IOA_067:HL_4V9F_069 = 0.4767HL_4IOA_067:HL_5FDU_067 = 0.1234HL_4IOA_067:HL_4IOA_067 = 0HL_4IOA_067:HL_3J7Y_040 = 0.2153HL_4IOA_067:HL_4V19_040 = 0.2778HL_3J7Y_040:HL_3JCS_064 = 0.5575HL_3J7Y_040:HL_4V91_071 = 0.5666HL_3J7Y_040:HL_5AJ0_073 = 0.6063HL_3J7Y_040:HL_3J9W_104 = 0.4548HL_3J7Y_040:HL_3J79_068 = 0.4705HL_3J7Y_040:HL_5J7L_201 = 0.4729HL_3J7Y_040:HL_4V8P_230 = 0.4307HL_3J7Y_040:HL_4V88_184 = 0.4356HL_3J7Y_040:HL_4V9F_069 = 0.4448HL_3J7Y_040:HL_5FDU_067 = 0.216HL_3J7Y_040:HL_4IOA_067 = 0.2153HL_3J7Y_040:HL_3J7Y_040 = 0HL_3J7Y_040:HL_4V19_040 = 0.1382HL_4V19_040:HL_3JCS_064 = 0.583HL_4V19_040:HL_4V91_071 = 0.5997HL_4V19_040:HL_5AJ0_073 = 0.6458HL_4V19_040:HL_3J9W_104 = 0.4954HL_4V19_040:HL_3J79_068 = 0.5124HL_4V19_040:HL_5J7L_201 = 0.5106HL_4V19_040:HL_4V8P_230 = 0.4587HL_4V19_040:HL_4V88_184 = 0.4648HL_4V19_040:HL_4V9F_069 = 0.4701HL_4V19_040:HL_5FDU_067 = 0.2813HL_4V19_040:HL_4IOA_067 = 0.2778HL_4V19_040:HL_3J7Y_040 = 0.1382HL_4V19_040:HL_4V19_040 = 0HL_3JCS_064HL_4V91_071HL_5AJ0_073HL_3J9W_104HL_3J79_068HL_5J7L_201HL_4V8P_230HL_4V88_184HL_4V9F_069HL_5FDU_067HL_4IOA_067HL_3J7Y_040HL_4V19_040Discrepancy0.000.100.200.300.400.500.60
    Copyright 2025 BGSU RNA group. Page generated in 0.3211 s