Motif HL_57089.1 Version HL_57089.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3JCS_064 | 3JCS | 0.4283 | 1 | 5 | 26S epsilon ribosomal RNA | C | 12 | A | 14 | A | 15 | A | 16 | C | 17 | G | 18 | A | 19 | G | 20 | cWW | cSW |
| 2 | HL_4V91_071 | 4V91 | 0.3846 | 1 | 1 | LSU rRNA | G | 3303 | A | 3305 | U | 3306 | A | 3307 | C | 3308 | G | 3309 | A | 3310 | C | 3311 | cWW | cSW |
| 3 | HL_5AJ0_073 | 5AJ0 | 0.3998 | 1 | A2 | LSU rRNA | G | 4933 | A | 4935 | G | 4936 | A | 4937 | C | 4938 | G | 4939 | A | 4940 | C | 4941 | cWW | cSW |
| 4 | HL_3J9W_104 | 3J9W | 0.1534 | 1 | BA | LSU rRNA | A | 2844 | A | 2846 | G | 2847 | A | 2848 | U | 2849 | G | 2850 | A | 2851 | U | 2852 | cWW | cSW |
| 5 | HL_3J79_068 | 3J79 | 0.1283 | 1 | A | LSU rRNA | G | 3697 | A | 3699 | G | 3700 | A | 3701 | C | 3702 | G | 3703 | A | 3704 | C | 3705 | cWW | cSW |
| 6 | HL_5J7L_201 | 5J7L | 0.1334 | 1 | DA | LSU rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | G | 2825 | A | 2826 | C | 2827 | cWW | cSW |
| 7 | HL_4V8P_230 | 4V8P | 0.0000 | 1 | F1 | LSU rRNA | G | 3263 | A | 3265 | G | 3266 | A | 3267 | C | 3268 | G | 3269 | A | 3270 | C | 3271 | cWW | cSW |
| 8 | HL_4V88_184 | 4V88 | 0.1890 | 1 | A5 | LSU rRNA | G | 3303 | A | 3305 | U | 3306 | A | 3307 | C | 3308 | G | 3309 | A | 3310 | C | 3311 | cWW | cSW |
| 9 | HL_4V9F_069 | 4V9F | 0.3384 | 1 | 0 | LSU rRNA | G | 2836 | A | 2838 | C | 2839 | A | 2840 | A | 2841 | G | 2842 | A | 2843 | C | 2844 | cWW | cSW |
| 10 | HL_5FDU_067 | 5FDU | 0.3932 | 1 | 1A | LSU rRNA | G | 2829 | A | 2831 | G | 2832 | A | 2833 | C | 2834 | C | 2835 | A | 2836 | C | 2837 | cWW | cSW |
| 11 | HL_4IOA_067 | 4IOA | 0.4139 | 1 | X | LSU rRNA | G | 2794 | A | 2796 | G | 2797 | A | 2798 | C | 2799 | C | 2800 | A | 2801 | C | 2802 | cWW | cSW |
| 12 | HL_3J7Y_040 | 3J7Y | 0.4307 | 1 | A | LSU rRNA | C | 3216 | A | 3218 | G | 3219 | A | 3220 | A | 3221 | C | 3222 | A | 3223 | G | 3224 | cWW | cSW |
| 13 | HL_4V19_040 | 4V19 | 0.4587 | 1 | A | LSU rRNA | C | 1555 | A | 1557 | G | 1558 | A | 1559 | A | 1560 | C | 1561 | A | 1562 | G | 1563 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAGACGAC | 3 |
| GUAUACGAC | 2 |
| GAAGACCAC | 2 |
| CCAAACGAG | 1 |
| AAAGAUGAU | 1 |
| GAAGACGAC | 1 |
| GUACAAGAC | 1 |
| CAAGAACAG | 1 |
| CUAGAACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGACGA | 3 |
| UAUACGA | 2 |
| AAGACCA | 2 |
| CAAACGA | 1 |
| AAGAUGA | 1 |
| AAGACGA | 1 |
| UACAAGA | 1 |
| AAGAACA | 1 |
| UAGAACA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (13)
- Basepair signature
- cWW-cSW-R-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.36 | Max 0.65
Coloring options: