HL_5FDU_076
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 5FDU|1|1a|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FDU_076 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.0783
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5FDU|1|1a|G|259
5FDU|1|1a|G|260
5FDU|1|1a|U|261
5FDU|1|1a|A|262
5FDU|1|1a|A|263
5FDU|1|1a|U|264
5FDU|1|1a|G|265
5FDU|1|1a|G|266
5FDU|1|1a|C|267
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1q
- 30S ribosomal protein S17
- Chain 1t
- 30S ribosomal protein S20
Coloring options: