HL_5FDU_138

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_138 not in the Motif Atlas

Homologous match to HL_7RQB_035

Geometric discrepancy: 0.0574

The information below is about HL_7RQB_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_87030.2

Basepair signature

cWW-F-F

Number of instances in this motif group

33

Unit IDs

5FDU|1|2A|C|1363
5FDU|1|2A|G|1364
5FDU|1|2A|A|1365
5FDU|1|2A|A|1366
5FDU|1|2A|A|1367
5FDU|1|2A|G|1368

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 27

50S ribosomal protein L34