HL_5FDU_158

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5FDU|1|2A|A|2268, 5FDU|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_158 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0558

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5FDU|1|2A|C|2264
5FDU|1|2A|U|2265
5FDU|1|2A|A|2266
5FDU|1|2A|A|2267
5FDU|1|2A|A|2268
5FDU|1|2A|A|2269
5FDU|1|2A|G|2270
5FDU|1|2A|G|2271
5FDU|1|2A|U|2272
5FDU|1|2A|A|2273
5FDU|1|2A|A|2274
5FDU|1|2A|C|2275
5FDU|1|2A|G|2276

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25