HL_5FDU_207

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

5FDU|1|1A|U|271, 5FDU|1|1A|U|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_207 not in the Motif Atlas

Homologous match to HL_9DFE_008

Geometric discrepancy: 0.3035

The information below is about HL_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|1A|G|269
5FDU|1|1A|C|270
5FDU|1|1A|U|271
5FDU|1|1A|U|272
5FDU|1|1A|G|273
5FDU|1|1A|U|274
5FDU|1|1A|C|275

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9