HL_9DFE_008

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

9DFE|1|1A|U|271|||K, 9DFE|1|1A|U|271|||N

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFE_008 not in the Motif Atlas

Homologous match to HL_8VTW_008

Geometric discrepancy: 0.2794

The information below is about HL_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

9DFE|1|1A|G|271|||I
9DFE|1|1A|C|271|||J
9DFE|1|1A|U|271|||K
9DFE|1|1A|U|271|||L
9DFE|1|1A|G|271|||M
9DFE|1|1A|U|271|||N
9DFE|1|1A|C|271|||O

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9