HL_5FDV_008
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUG
- Length
- 4 nucleotides
- Bulged bases
- 5FDV|1|1A|U|271
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FDV_008 not in the Motif Atlas
- Geometric match to HL_7RQB_009
- Geometric discrepancy: 0.1674
- The information below is about HL_7RQB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89098.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
5FDV|1|1A|C|270
5FDV|1|1A|U|271
5FDV|1|1A|U|272
5FDV|1|1A|G|273
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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