HL_5FDV_030

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

5FDV|1|1A|U|1220, 5FDV|1|1A|G|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_030 not in the Motif Atlas

Homologous match to HL_7RQB_031

Geometric discrepancy: 0.2981

The information below is about HL_7RQB_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94651.3

Basepair signature

cWW-tSS

Number of instances in this motif group

6

Unit IDs

5FDV|1|1A|G|1217
5FDV|1|1A|G|1218
5FDV|1|1A|A|1219
5FDV|1|1A|U|1220
5FDV|1|1A|G|1221
5FDV|1|1A|A|1222
5FDV|1|1A|C|1223

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains