Motif HL_94651.3 Version HL_94651.3 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | 2-3 | 3-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5F5F_001 | 5F5F | 0.6679 | 4 | B | RNA (20-mer) | C | 7 | G | 8 | A | 13 | G | 14 | cWW | tsS | |
| 2 | HL_5F5F_003 | 5F5F | 0.6612 | 4 | F | RNA (20-mer) | C | 7 | G | 8 | A | 13 | G | 14 | cWW | tsS | |
| 3 | HL_5F5H_001 | 5F5H | 0.6242 | 4 | C | RNA (21-mer) | C | 8 | G | 9 | A | 14 | G | 15 | cWW | tsS | |
| 4 | HL_5F5H_002 | 5F5H | 0.5960 | 4 | D | RNA (21-mer) | C | 8 | G | 9 | A | 14 | G | 15 | cWW | tsS | |
| 5 | HL_5KK5_001 | 5KK5 | 0.0000 | 2 | B | RNA (40-MER) | C | -11 | U | -10 | U | -8 | G | -6 | cWW | ncWS | |
| 6 | HL_7RQB_031 | 7RQB | 0.8452 | 3 | 1A | LSU rRNA | G | 1171 | G | 1173 | A | 1177 | C | 1178 | cWW | tsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUUUUAG | 2 |
| CGUUCUAG | 2 |
| CUCUUG | 1 |
| GGAUGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUUUA | 2 |
| GUUCUA | 2 |
| UCUU | 1 |
| GAUGA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
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